NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157140_10000338

Scaffold Ga0157140_10000338


Overview

Basic Information
Taxon OID3300012348 Open in IMG/M
Scaffold IDGa0157140_10000338 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5802
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameColdwater, Ontario
CoordinatesLat. (o)44.58751Long. (o)-79.6655Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038245Metagenome / Metatranscriptome166Y
F045760Metagenome / Metatranscriptome152N
F053790Metagenome / Metatranscriptome140Y
F070116Metagenome / Metatranscriptome123N
F078719Metagenome / Metatranscriptome116Y
F099303Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0157140_1000033810F045760AGGAGMASVSKSKQAYSALYKSSTRWATNRKIKLTRLLKQQPNNEQIKDALANIKYRRHTPNSKTVWSHSNIRLAKLFKEFTGRASADLFSSNPKVQAAALSYRPDPDKLKVIEGKVNFSLGARAHDSKGNFIWK*
Ga0157140_1000033811F038245AGGAMKIYFGNANEDFFADGLYTLGDNQYYYGVEHGTNPGGMDEVSIFDGCNRFLPVHMEAIPELIAALQEIQKIQETISEARQLSARAESNIEGAVTEAWEDYYEVDFDQE*
Ga0157140_1000033812F053790GGAGMSERIYVCVVCGHQLSEADWLSLPDEVNCPECGVSKHDYVLME*
Ga0157140_100003387F070116N/AMSKFNTWDSTELSDAVKISLQIRTKIEEMCLTAMVSPDDLPNSLIPTSNLYKLVCAYEAAYAELLAQDLVRTGNPKTNKKIH*
Ga0157140_100003388F099303N/AMKFLEFTYTKADGTQSKRAVIELVTPTQFVEGIDVSGLDQDSFADFCREFSALKADQHNQTMEKLAQYDLKHSYRRFIPEQMSDVTHDYV*
Ga0157140_100003389F078719AGGMEIIELYLLFALTTGISSCVIFLAPAIAEAKFIGIENSFTENTWISYLTYVVITSFFAPFTVLPIFIPSFAERFKTGIGRAVFESQT*
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