NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137390_10710866

Scaffold Ga0137390_10710866


Overview

Basic Information
Taxon OID3300012363 Open in IMG/M
Scaffold IDGa0137390_10710866 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)967
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063504Metagenome / Metatranscriptome129Y
F073745Metagenome / Metatranscriptome120Y
F102895Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0137390_107108661F063504AGGAGMTETNKARDLVATLRDALHQLEGALGRTRGGVDEIASQAERIRDSVAALGELWQREDT
Ga0137390_107108662F073745GAGGMSEPMSDPMRRQRTSGRRLTTAALLPGAPSASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCTACGGLAPAAPARPWAVVPACPVCVHLPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0137390_107108663F102895AGGAGGMPNDHEDRFRRHEEIMEGLARMLAAQHEFNRQQLEINVDVKTTLARIETLIARMLPTGENGREA*
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