NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0138277_1103059

Scaffold Ga0138277_1103059


Overview

Basic Information
Taxon OID3300012751 Open in IMG/M
Scaffold IDGa0138277_1103059 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada - M_130821_E_mt (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)502
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Quebec
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071293Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0138277_11030591F071293N/AFKIRNKGFNNTAAALNPRVHPAKKTKIQADLTRYITVQVQITRFTGMRILHNYRNISRSTKQFLMGDKILEQLMILTIKEHYFRPMYYRSPIENSFYLGRSLADLTDRHYSLFANNQHPLQLYVYEEYNKFLRAAHNKDEQENLKYINDRMGQVMEDRSKIINAKEG
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