NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137394_10331983

Scaffold Ga0137394_10331983


Overview

Basic Information
Taxon OID3300012922 Open in IMG/M
Scaffold IDGa0137394_10331983 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1298
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015939Metagenome / Metatranscriptome251Y
F056937Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0137394_103319831F056937GAGGMQTQAPKGQYRVIGLDPVDTLTWPSGPLWKDCETFDEARDLADRNEESYAWVYV
Ga0137394_103319832F015939GGGGGMSTYDEMSPAERRQLMEALGSLTGLQEGPNGRPSNGTHYEYDPDLKRTVEVTPSGERFPVALVGDKLIRDSEKSVPRKGEAA*

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