NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0137419_10009837

Scaffold Ga0137419_10009837


Overview

Basic Information
Taxon OID3300012925 Open in IMG/M
Scaffold IDGa0137419_10009837 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5113
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038169Metagenome / Metatranscriptome166Y
F096697Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0137419_100098371F096697AGGAGGMKPKMLWVLLIFFGLWSSPAAADNRFIVRARSGPVALQQICLVFGCNVSSGLDGDLGKLFLVTTPDFIDPNAFLQTLRSQPGIKH
Ga0137419_100098379F038169N/AGGGFGIFGMGVLFEEMGAEQHSTIDAWLCGLAGHRGKDLGKNSFSQIRS*

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