NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0164300_10007983

Scaffold Ga0164300_10007983


Overview

Basic Information
Taxon OID3300012951 Open in IMG/M
Scaffold IDGa0164300_10007983 Open in IMG/M
Source Dataset NameUnamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3190
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Amended Soil Microbial Communities From New York, Usa To Study Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Mt. Pleasant research farm, Cornell University, New York
CoordinatesLat. (o)42.4531Long. (o)-76.3842Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019401Metagenome / Metatranscriptome230Y
F042588Metagenome / Metatranscriptome158Y
F062211Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0164300_100079832F062211GAGGMNRTVHVCRLALIGVLLLALPSPVLANWWIVRSSDKKCLVVDIEPMGKDKSVTKIGEKVYLTREEAEEDVKRLCK*
Ga0164300_100079833F019401N/AMGAVGTGREDMSEPVAKDLNEAKELREVIDALRADNGRLLRLLIAGFVSDARPEHKELTKVLTHHPKLRNWLGAGELRNLNANQNQITQREDSDKSSVQPTTIKARHRRGRRGKGKMGSGR*
Ga0164300_100079836F042588AGGAMTNKIFRMLLKAIAAFAITASFGSASFAGEITIREGKRYCATLALNSVERLADNALIARKFRALGFSSVRVSGTGAKRRVEGVWHRKDASTTLPRQIVAVAGL*
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