NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157393_12862

Scaffold Ga0157393_12862


Overview

Basic Information
Taxon OID3300012978 Open in IMG/M
Scaffold IDGa0157393_12862 Open in IMG/M
Source Dataset NameHot spring water viral communities from Western Cape, South Africa - Brandvlei
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of the Western Cape
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2033
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Water → Hot Spring Water Viral Communities From Western Cape, South Africa

Source Dataset Sampling Location
Location NameWestern Cape, South Africa
CoordinatesLat. (o)-33.732496Long. (o)19.413317Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093488Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0157393_128622F093488AGGAGGMADGLFYWDTREPFIGADIASVTLSTTDVALYPPSNFPVLGGQYWSRVGKKIRIRLFGRMTTGATPGNLTFDIYYGSGANATGTILASSAAVALTASQTNLSWMCEVTVHCRSIGSSGTLFCVGWALFNPSLIASTNQPILIPASAPVVSAAVDLTAANIISIQAKRSGSTTETMQVHDMEVVAMN*

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