Scaffold Ga0157393_16101

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0157393_16101

Scaffold Ga0157393_16101

Overview

Basic Information
Taxon OID	3300012978 Open in IMG/M
Scaffold ID	Ga0157393_16101 Open in IMG/M
Source Dataset Name	Hot spring water viral communities from Western Cape, South Africa - Brandvlei
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of the Western Cape
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	780
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Hot Spring Water → Hot Spring Water Viral Communities From Western Cape, South Africa

Source Dataset Sampling Location
Location Name	Western Cape, South Africa
Coordinates	Lat. (^o)	-33.732496	Long. (^o)	19.413317	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042051	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157393_161012	F042051	AGGAG	MVTFGEISWDDDVFGDESKKNNSKDLFLRLDEGSNEMRIITQPHQYLVHRYKKEGDPGFGHRVYCSMAHGFCPLCAMGDKAKPRWLLGVISRKTGTYKILDISFAVFSQIRKLARNTQRWGDPTKYDIDIVVDKNGGATGYYSVQPVSK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.