Basic Information | |
---|---|
Taxon OID | 3300013049 Open in IMG/M |
Scaffold ID | Ga0164286_123116 Open in IMG/M |
Source Dataset Name | Enriched Organic Plus compost microbial communities from Emeryville, California, USA - RNA 5th pass 30_C BE-Lig OP (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1228 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Emeryville, California | |||||||
Coordinates | Lat. (o) | 37.83 | Long. (o) | -122.29 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001904 | Metagenome / Metatranscriptome | 619 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0164286_1231161 | F001904 | N/A | MSSSRFVLLALVALLASLAYVSATSDFLQAVAAVEGDCHPECRWQCDDPVCPAVCHPVCERPKCQIHCEETECAKCKIHCDKPQCNVRCPKDLCEKKDCPKCETVCSPANCRTQCEAPAAVCTPMCEATKCDWKCKKPITCPKPKCELVCERPACDTRARTEGTKPGCCSCADQANLAATIRAANSLMEVDSEMSQMMPSFMEVMHTIKAKGQQGNDMCCKCAA* |
⦗Top⦘ |