NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157373_10051772

Scaffold Ga0157373_10051772


Overview

Basic Information
Taxon OID3300013100 Open in IMG/M
Scaffold IDGa0157373_10051772 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2923
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049308Metagenome147Y
F066982Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0157373_100517724F049308GAGGVKKYCNFCGEPMQADQKECKQCGWDISHNGPPSTDPGDNKARVGVALGLIVAYGVMWFLVQGAPVSARADEAPRPEPVAATEYDYQPVSEPATAIGTVSPAVATVAPSPAKPSALINIKIADSRSSTIGPRDALQYTFELPETDQKCRLVGSTKGVGGFGRNIEVFLLTDDEYVFWHANPAAIANSSWETFRGSENTLGYDLPGAGVYHFIVSNEMSATPQSIAVKAQVRCTH*
Ga0157373_100517725F066982AGGAMIYTGYAMDPQTFEASPIEEMDPIECPACHQVHRWTKRDARF
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