NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157378_10555228

Scaffold Ga0157378_10555228


Overview

Basic Information
Taxon OID3300013297 Open in IMG/M
Scaffold IDGa0157378_10555228 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049977Metagenome146Y
F055251Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0157378_105552281F055251GGAGGMKKISVITATLVGAAVLCASPISLHQAQDKGLSLSVDKAVAYTY
Ga0157378_105552283F049977N/AASFIAWPTIVYQHGRSRAALDTPISVANRGEISKDRSSPTEQTSPVLAAYEAPTKPVLPTAKSAPAVLPESHELTWVTVLLPARAHTGPSVDTPITHFYAVGTPLHATRYWNDWIEVSEPGASKSGWIYRKYLGAISNSEQKIASQEVQAQNAVAHSVPAKRYVEANPTKRYANNVRSKQSTRAKPGAARPIRARTEMASLLQRAFSCY*
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