Scaffold Ga0180014_1018511

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180014_1018511

Scaffold Ga0180014_1018511

Overview

Basic Information
Taxon OID	3300013391 Open in IMG/M
Scaffold ID	Ga0180014_1018511 Open in IMG/M
Source Dataset Name	Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S1_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	808
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location Name	Finland: the Olkiluoto Island
Coordinates	Lat. (^o)	61.2418	Long. (^o)	21.4803	Alt. (m)		Depth (m)	410
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076223	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180014_10185111	F076223	N/A	MGCRQSGAMLMAGLAVLFMVIMAAAPAPLQAANQVAELMVSDHADAKGVVEQHQSKFSSSVAEIYGTALISGAKKGKEVTTELFYVTQNLNVLSSRDDLPDDGEVTLTFAFPKPDKGWPAGDYKLVISIAGGATKAVTFQVK*

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