NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0180014_1021691

Scaffold Ga0180014_1021691


Overview

Basic Information
Taxon OID3300013391 Open in IMG/M
Scaffold IDGa0180014_1021691 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR13_S1_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)740
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location NameFinland: the Olkiluoto Island
CoordinatesLat. (o)61.2418Long. (o)21.4803Alt. (m)Depth (m)410
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034814Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0180014_10216911F034814AGGAGGMTSLAAEKIETLPGLHSCFTCADNMGCNLEMRCESMAGCLKWRCRVCRAPWWAVGYHHESCNATGVPNGVTYHDGTHMAPLPEASGHYYRHGGYCRVHQSWRCGLGRPDADQ*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.