NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181298_103433

Scaffold Ga0181298_103433


Overview

Basic Information
Taxon OID3300013880 Open in IMG/M
Scaffold IDGa0181298_103433 Open in IMG/M
Source Dataset Namelaboratory microbial enrichments from Reconcavo Basin petroleum reservoir, Newcastle Upon Tyne, UK - 15 gl 40C L3 15gl 40C L3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUNIVERSIDADE DE SAO PAULO
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium ADurb.Bin088(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Laboratory Microcosms → Microbial Communities From Methanogenic Microcosms From Oil Petroleum Samples

Source Dataset Sampling Location
Location NameNewcastle Upon Tyne, United Kingdom
CoordinatesLat. (o)54.97825278Long. (o)-1.61778056Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024777Metagenome / Metatranscriptome204Y
F025938Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0181298_1034331F024777AGGMKGVKMDADLIFAEDVEVCPKCGSSEFWENRIIWVGDDPTDEELASIECKRCGAVFYARDYYRRRFGKLEDDYEEIPF*
Ga0181298_1034333F025938AGGAGMAIIIPDKIVDLLSSMFEDVRDKQFIIGDTLIEIVNAMGDKGGTITYLAGRLGVSASTLYDYYRIAKLWTPEYRAMYQALDWTIYRNADPNDPEDRVLLDRCVDEQWSSATFKENKYPALKDPNTIIGKMVSLGKRVYAQDTLEIEHREAILKAINILEKVMRELEVMEFADVKF*
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