NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0119952_1009243

Scaffold Ga0119952_1009243


Overview

Basic Information
Taxon OID3300014050 Open in IMG/M
Scaffold IDGa0119952_1009243 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Institute of Technology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4047
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.21Long. (o)-83.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072277Metagenome121Y
F102814Metagenome101N
F103142Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0119952_10092431F103142GAGGMALDYKGFKWGERISADQDSVDRFLHEGLVPQSPSVGDLQSAAEWIATYGSENAEEAQGWANVVAFLILTAESKEKRSVLAQAKKKFAEANGIPVSQVRINRNN*
Ga0119952_10092432F072277AGGAGGMEKCVKCGVAVEKMEVFPKGVCLACYAVEFEKKFQSALKIARFK*
Ga0119952_10092434F102814GAGGMMAGTKPRDSQRQRLYDAQRLAGFYDTGEVMTIKEAQKFVNQVLSHQKTKKLHKQYAFWASVYPSKIIVEAGSGNHATMRNRNWETVRLIRLNKWGRNKFIVLHEIAHHITWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNEKRVRVMTKTKKARVPRKRETESARLVA*
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