NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0120135_1014440

Scaffold Ga0120135_1014440


Overview

Basic Information
Taxon OID3300014054 Open in IMG/M
Scaffold IDGa0120135_1014440 Open in IMG/M
Source Dataset NamePermafrost microbial communities from Nunavut, Canada - A34_5cm_12M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Tennessee
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)923
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost Microbial Communities From Nunavut, Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameCanada: Axel Heiberg Island, Nunavut
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032421Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0120135_10144403F032421N/AVNKRPGQIKVTVEVGFCSFCDRTRNLRSEERQLGALVRTVTSCESCHRVLSSTIG
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