NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181527_1057697

Scaffold Ga0181527_1057697


Overview

Basic Information
Taxon OID3300014153 Open in IMG/M
Scaffold IDGa0181527_1057697 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2032
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).6 to .7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005112Metagenome / Metatranscriptome411Y
F007120Metagenome357Y
F020126Metagenome225Y
F101012Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0181527_10576971F101012N/ATVTCTEIVNYSIHGVESPLGVTFALGGTLVNILMVTFIVPIWCRLSNLERR*
Ga0181527_10576972F007120AGGAGGMKTLFITLSAACAVVAGYFCVRYFTRRELGFTPARKYVRNLAANLLHTEVTAAREAGATPNTITEQAA*
Ga0181527_10576973F005112AGGAGMSLVTRYRLFWAALVAALLGLAFWKNSQSYPHKSRLWRLGKAVIDTGLVLLMVIYAPALLLMYVVIWLTSPFRNKIVQVSAAFASILAVTHLAGVVFEAVAVLGVFAVDLLTGQVVARMDKRERNKLAKAA*
Ga0181527_10576975F020126GAGGMNRLANLALSVGETLAHECGRLLFGIALGRAKELLGTPQQLGTRQLALNRALQKKAV
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