NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181529_10032549

Scaffold Ga0181529_10032549


Overview

Basic Information
Taxon OID3300014161 Open in IMG/M
Scaffold IDGa0181529_10032549 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3972
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).3 to .4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003175Metagenome / Metatranscriptome503N
F008922Metagenome / Metatranscriptome326Y
F014565Metagenome / Metatranscriptome262Y
F063105Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0181529_1003254910F008922AGGTGGMTTKQRLACGAAILLSIDARRQRTENRNELLALEQAIVDRELIELVAGGLCDEKREPAGDRVRKDTCRAATRATGELYEKELRRANL*
Ga0181529_1003254911F003175GGAGGMNRIELSGKSQGKGRNGYFQLHSVELMNIPTDPDGQVLNIDFYPRRRVNCVGPARLLLNVEDATKLAQFLGEAVECRPPVANIEHGVLVCECGHRGTPRLEESGYQVSHALVEIVGDTIIASGWDGSSRAVSEEGDAYWLMCDRCGKLHPLPPELHIDWR*
Ga0181529_100325495F063105N/AMRAADELTLALIALARREALEAGLGTNGRMDLDGIRSTAEPVGVNIHAHGD*
Ga0181529_100325497F014565AGGAGMKKAVNSGLILLSIGALLLSGCGLRQCLHTTMGCEPDRTEREKPCREFGGPTTGCHFN*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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