Basic Information | |
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Taxon OID | 3300014168 Open in IMG/M |
Scaffold ID | Ga0181534_10015001 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3986 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 47.1149 | Long. (o) | -88.5476 | Alt. (m) | Depth (m) | .1 to .2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001528 | Metagenome / Metatranscriptome | 677 | Y |
F064903 | Metagenome / Metatranscriptome | 128 | N |
F090320 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181534_100150014 | F090320 | GGAGG | MIDPKTNQNRENSGFWTLSKFGGLDQLDWLMILVSVLIGTIAKQHHFLQLPDGFLEWVLPFLLMMAGYKARGKITEIIEVRRAEAKQAPNE* |
Ga0181534_100150015 | F064903 | GAGG | MRLLFPSNYDRADVLMSAGCSTFVSAALILVIPRIGVLLLEILFGLFFIGCALMARARVRRRVLGKEGPKKSSDAKAKWFDRYDFLMILAVIVIQTVAARLLRKAGWSEGTVSILPLMMFAAGILLKPRVVEFVGCRRKTQPVVSDCGNIASQPGNLDPTDHVLGPE* |
Ga0181534_100150017 | F001528 | GGA | MNSATSLAVKKEKPMSEKNQIVVVLVVALSLGAFVDRITALKIVAGVALLWTLQNQPTVFECIRKAFSFRRGRFSMREYRGGA* |
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