NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181531_10000013

Scaffold Ga0181531_10000013


Overview

Basic Information
Taxon OID3300014169 Open in IMG/M
Scaffold IDGa0181531_10000013 Open in IMG/M
Source Dataset NamePeatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)185533
Total Scaffold Genes153 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)103 (67.32%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)47.1149Long. (o)-88.5476Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008313Metagenome / Metatranscriptome335Y
F039730Metagenome / Metatranscriptome163Y
F075147Metagenome / Metatranscriptome119Y
F097717Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0181531_10000013126F039730N/ALGIREGLARTFGSLVSFLAILFLLLGFYLLGNALEHPVDAQAATVLAAAFGTTVAAILFYYLLKPRRSKHAHARIVRIRRAG*
Ga0181531_10000013127F075147GAGGMKTGERWHCANPACHCEALVQSGSGIAAGIPRCVCGAPMKRSCTAPNFTYLDFLHVHEPMSVRDGSQEN*
Ga0181531_1000001319F097717AGGAGGMRHRKNFTLFWKMFFAAATLAGALILSSAPQSRADECQDRIIKIDRELHKAAADHGWDSPQANEKRSELLGAREWCWEHSHRWWDEDGKRWHTEHDWDAHDHDHLPN*
Ga0181531_1000001365F008313GGAMTAAFILVMSVLALLSFSISQWRMIWLTTANQPLSDSLRAATGIETDSIGPNEFEKLLGLCDELSPLIKQRTPWLRELAFYHCVLARLERVIRSVQPTISVWAAQEMSICSRYVAVVLDQNLSVDLDRRAAARAS*
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