 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300014686 Open in IMG/M |
| Scaffold ID | Ga0134311_100515 Open in IMG/M |
| Source Dataset Name | Well water microbial communities from Bangladesh - BaraHaldiaGW0309 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Tennessee |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3065 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium B3_Chlor | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Well Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Bangladesh: Bara Haldia, Matlab upazilla | |||||||
| Coordinates | Lat. (o) | Long. (o) | Alt. (m) | Depth (m) | 10 to 30 | Location on Map | ||
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013484 | Metagenome / Metatranscriptome | 271 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0134311_1005152 | F013484 | GGGGG | VKVQLDFSDCTLSTEHQAVVSAVNQFLVWLPDDEDPEVALRLAMTILEAANVAPQDVLARAVGFSQSRSVRVYKQRLREEGLAGLFDHPIPGRPAVTTRTPVEKALFQVILSAVIEEHALPDDATLAERMNQVLREAQAPEAGQVTASMVETLRLRWDIQRVPLTRQLQAAPPPMPAEPERVRPGRTQVGGAFVLAVLLVEAGWLKFAHLLPMVPKYAVTATQWLLTAIFAVIFGVRRAFHLDDVCDPGFALVTGRPRPLSHGTFQHLLWAIPGSAAAQFYQATARQIIQSLGAGVRRLSLDGHNLARYTHLVDLVKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYQGTKKLSQGIVPIVQEVLEHRGDLKGLLRLFFDKGGYHGQIFRALSECPDVHFYTPAVRYPDNVAQWEQLTDAQFDPEPFVFDKHADLPQAERPTYRLADTEMTLNVRQKQKVVGQVTLRAIVLHNPQGQKPAERWPVVFLTDDRQIDARALLNEYGDHWGQEFGHRIGRHDLYLDILPPGYVLRTYRDETGQLQREVEYDQTAFFLSAWLRCLVFNLMRRFAVELGGDYAKLWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDALRPLLDKLNTKRTAIPWLNNLVVQFSIAQDEPLYPLAGPEKRNRLFGDG* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |