Scaffold Ga0134563_108429

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0134563_108429

Scaffold Ga0134563_108429

Overview

Basic Information
Taxon OID	3300014943 Open in IMG/M
Scaffold ID	Ga0134563_108429 Open in IMG/M
Source Dataset Name	Human fecal microbial community of Hadza hunter-gatherer populations from Tanzania - 10027
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Bologna
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1423
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Community Of Hadza Hunter-Gatherer And Regular Subjects From Tanzania And Italy

Source Dataset Sampling Location
Location Name	Tanzania
Coordinates	Lat. (^o)	-3.6347588	Long. (^o)	35.0828588	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0134563_1084292	F029444	N/A	MGVSEQLTGFELEDLMSWTVSNLQRPFREDFSLEISGIIAEKESQIFGRRFVGFDS*

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