NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182824_10057105

Scaffold Ga0182824_10057105


Overview

Basic Information
Taxon OID3300014966 Open in IMG/M
Scaffold IDGa0182824_10057105 Open in IMG/M
Source Dataset NameFreshwater microbial mat microbial communities from Canadian High Arctic Lake, Ward Hunt Island, Canada - Sample WHa
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterLaval University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)615
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat → Microbial Mat Communities From High Arctic Lakes

Source Dataset Sampling Location
Location NameCanada: Ward Hunt Island
CoordinatesLat. (o)83.079722Long. (o)-74.138056Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068999Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0182824_100571051F068999AGGAGGMRGSGWLAAVVVAGWSQAALAAEMLPLKQGIYVPVNRPCKGASNAEMLNYRGEKSSFGSAQAACTIVKMTRRGNVFTITDKCVDIRGGGDIEGGPVVVTIASPTGFSKDGERYRYCGPRAQF*

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