Scaffold Ga0120098_1009490

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0120098_1009490

Scaffold Ga0120098_1009490

Overview

Basic Information
Taxon OID	3300015170 Open in IMG/M
Scaffold ID	Ga0120098_1009490 Open in IMG/M
Source Dataset Name	Fossil microbial communities from human bone sample from Teposcolula Yucundaa, Mexico - TP48
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Harvard University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1042
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Fossil → Unclassified → Fossill → Fossil Microbial Communities From Human Bone And Soil Samples From Teposcolula Yucundaa, Mexico

Source Dataset Sampling Location
Location Name	Mexico: Teposcolula Yucundaa
Coordinates	Lat. (^o)	17.550556	Long. (^o)	-97.425556	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034330	Metagenome / Metatranscriptome	175	Y
F035656	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0120098_10094902	F034330	GGAGG	MRVVETLTLLLAATVLFMWVIFAHPTPDERARLHDSMGASTGIAWR*
Ga0120098_10094904	F035656	N/A	MFAPTGNGEFRLASAAGLRAFLWEATIPAERIDEALDALRSDTEHEIPNVTLTLERMSKLGL*

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