NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180085_1101325

Scaffold Ga0180085_1101325


Overview

Basic Information
Taxon OID3300015259 Open in IMG/M
Scaffold IDGa0180085_1101325 Open in IMG/M
Source Dataset NameSoil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)849
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9517Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034330Metagenome / Metatranscriptome175Y
F035656Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0180085_11013251F034330N/ALLLAATVLFMWAIFAHPTPEERARLHDSMGQSTGIAWR*
Ga0180085_11013254F035656N/AMFAPTGNGECRIATAAGLRAFLWEATIPAERIDEALDALRTDTEHEIPNVMLTLERMSKLGL*

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