NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182007_10221190

Scaffold Ga0182007_10221190


Overview

Basic Information
Taxon OID3300015262 Open in IMG/M
Scaffold IDGa0182007_10221190 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)669
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Sorghum-Associated Microbial Communities From Plants Grown In Nebraska, Usa

Source Dataset Sampling Location
Location NameUSA: Nebraska
CoordinatesLat. (o)41.1591Long. (o)-96.4086Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019225Metagenome231Y
F099836Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0182007_102211901F019225N/AMAVNPTSPEAQAELARRHKAAAVTVAGLLIATVLLSVVAFVARPYLIERPPNGSLDIATRIVVLFFGLGAVAWRRNRFSPMRLQDITGLQGVSGLVKTLEKVTIQMAILAESIATIGFIVTLVTG
Ga0182007_102211902F099836N/AFMGNLMQQVSGRADVTVNKNGILISKDGKEGTDLIDEALKYNGTLPDKRTPDAPTQRSPRAQTAPQPAAATNGTTAPAAIKP*
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