NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182157_1088088

Scaffold Ga0182157_1088088


Overview

Basic Information
Taxon OID3300015296 Open in IMG/M
Scaffold IDGa0182157_1088088 Open in IMG/M
Source Dataset NameMiscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_12JUL2016_LD1 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)528
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012313Metagenome281Y
F038059Metagenome166Y
F039923Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0182157_10880881F039923N/AMDRPVVGLRLPKLPILFAALWIVIPGRQLQTFVLAMSEER
Ga0182157_10880882F012313GAGGMLELVPVLCSLAVALFFSGFLSDLLDTIGLPAKHILPYYFLLHNQPSFDQQLIFQADHEHFYFLSADPCYYHDTHLEHG*
Ga0182157_10880883F038059N/AMAFLLPSKFRALVDQEVYSDFDESEYEEIVAKLTVI

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