NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132258_10153508

Scaffold Ga0132258_10153508


Overview

Basic Information
Taxon OID3300015371 Open in IMG/M
Scaffold IDGa0132258_10153508 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 and col0 rhizosphere and soil
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5527
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001070Metagenome / Metatranscriptome787Y
F005673Metagenome / Metatranscriptome393Y
F055340Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0132258_101535083F005673N/AMNSDRVITDAIRSAQRLVWHTHDLPDAMKVVRLRKFVRSPTVQSAMQRCSDTLVAFTLRAVELVIADQSRTDRDMLRRLCEILNNPHLIQAVGPQNSPFGPSWLSAKAALGFSATRRYGL
Ga0132258_101535087F055340GGAGVFAVAFICYSEIKPHAEIPWATLEMCATIAFGIPLVVLLLGWASLGSAVKRS*
Ga0132258_101535088F001070N/AMFDCRRLAMSSLDKMLGWFPHTSTEWFELIIEALLLWLLMVVAISEIELLT*
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