NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0132257_100564680

Scaffold Ga0132257_100564680


Overview

Basic Information
Taxon OID3300015373 Open in IMG/M
Scaffold IDGa0132257_100564680 Open in IMG/M
Source Dataset NameCombined assembly of cpr5 rhizosphere
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1403
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049544Metagenome146Y
F090016Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0132257_1005646803F090016N/AMRTPALVIAAVVVAACSQPEKQLESGRQYRSITYTDTTFESFGRTDQAITGVIVEGLGDSVRFRIHTNADGLVPVLDFTLHPASSRDQRPPPVTRRIGMPQGTMPVLGTSVAFLEQILRRARVVGGDSVSIPVMMVGAQSSLDVFTVIRNGDDSVVLVTPQGDLTAALHLAVDSAGHISGGVIPLSGTRIQKL*
Ga0132257_1005646804F049544N/AAELMGAWASARNVMGPSIPKEQHQEPGTGGSQTPKAA*
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Institute for Fundamental Biomedical Research
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