NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0132255_102074444

Scaffold Ga0132255_102074444


Overview

Basic Information
Taxon OID3300015374 Open in IMG/M
Scaffold IDGa0132255_102074444 Open in IMG/M
Source Dataset NameCol-0 rhizosphere combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere → Arabidopsis Rhizosphere Microbial Communities From The University Of North Carolina

Source Dataset Sampling Location
Location NameUniversity of North Carolina
CoordinatesLat. (o)35.9Long. (o)-79.05Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068803Metagenome / Metatranscriptome124Y
F072574Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0132255_1020744441F072574GGAGGMVRWNILRLDQFAPTISVESWIIMAGGAFLLSLCFLVSFIAADAWMSRQPISLRSICSSVLELYESRGEITYNEKWQQELSRLRDDCAVALSARQARPNTSR*
Ga0132255_1020744442F068803AGGAGGMKTAQSPSVTIRQIEFELEKAEHGMGLPYDTERVMQLRSMLREERKKKLSAGLKARQEQGRR*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.