NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182039_10759442

Scaffold Ga0182039_10759442


Overview

Basic Information
Taxon OID3300016422 Open in IMG/M
Scaffold IDGa0182039_10759442 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)858
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012709Metagenome / Metatranscriptome278Y
F086013Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0182039_107594421F086013N/AMVNTQSDQDLFATLYLLGFNFLGGDSGEIAEIKGDMTIKLVH
Ga0182039_107594422F012709GGAMQTEELATQLTNSRGRPIKFTPERLQQIRNLVERGNSREEIAELIGATVGSLQVTCSRLGISLRRVVFDNGMGL

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