Scaffold Ga0126362_10040129

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126362_10040129

Scaffold Ga0126362_10040129

Overview

Basic Information
Taxon OID	3300016461 Open in IMG/M
Scaffold ID	Ga0126362_10040129 Open in IMG/M
Source Dataset Name	Continental margin sediment microbial communities from China - ANME2c_DSS_Sorted metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1264
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Artiodactyla	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Continental Margin Sediment → Continental Margin Sediment Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	China: Qiqihar, Heilongjiang
Coordinates	Lat. (^o)	47.5233	Long. (^o)	125.0078	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020289	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126362_100401292	F020289	AGGAGG	MTENEMVGWHHRLDGHESEQALGGGDEQEKLGCCSPWGRKESDTTEQLN

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