NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0186398_1033487

Scaffold Ga0186398_1033487


Overview

Basic Information
Taxon OID3300017375 Open in IMG/M
Scaffold IDGa0186398_1033487 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic communities from McMurdo Sound in HESNW medium w/o silica, 4 C, 30 psu salinity and 283 ?mol photons light - Polarella glacialis CCMP 1383 (MMETSP0227)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterNational Center for Genome Resources
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)512
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Source Dataset Sampling Location
Location NameMcMurdo Sound
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026799Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0186398_10334871F026799AGGAMGATGSCCSCEDDALPGSEDGRRPGRETRKRSPNEFTIVIDRRTGEGLGIDASPEKNGTLEIKNITPGGLVDRWNRSQPPDSREHVMPGNRVIEVNGRYSSAVQLIAACRENEELHITVI
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