NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0182737_1045725

Scaffold Ga0182737_1045725


Overview

Basic Information
Taxon OID3300017646 Open in IMG/M
Scaffold IDGa0182737_1045725 Open in IMG/M
Source Dataset NameEnriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C BE-Lig OP (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1243
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034190Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0182737_10457251F034190N/ALGVPHSAAGKQHFAALLVYEGGDSWLELQDCCAEGLTPFTGDSAAFPHIWAVLQHFIDTRGAFLNGDWCFLNAVLGLMAPSTTHPCPICIVGKNNLLSSSRYRTANDRHSIDRTHTPLLTIIPERIVPTPLHLFLGISNRIILDAYKELFGEAVVLQAVAAIKTVHSSGCGGASDLYDLNGPEISKFLKQNRSAAMLESPAAAVILPAAARASHSILSRWLEQLHCSLLHSRDWTPADIGAWCSVVDDIQQHWCAETSQAAFPKLHMLRHSLEFAERHRFLGRASEAQIESFHAQFNVLFHKQHRNQSSNTAERLRRSLADTALRAVQPLLSLPIEPTSASF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.