NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017646

3300017646: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C BE-Lig OP (version 2)



Overview

Basic Information
IMG/M Taxon OID3300017646 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127392 | Gp0191745 | Ga0182737
Sample NameEnriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 5th pass 30_C BE-Lig OP (version 2)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size400832115
Sequencing Scaffolds17
Novel Protein Genes17
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria3
All Organisms → cellular organisms → Bacteria1
Not Available8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cenepequi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → anthropogenic environment → compost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Emeryville, California
CoordinatesLat. (o)37.83Long. (o)-122.29Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001230Metagenome / Metatranscriptome741Y
F003648Metagenome / Metatranscriptome475Y
F034190Metagenome / Metatranscriptome175Y
F041209Metagenome / Metatranscriptome160Y
F050234Metagenome / Metatranscriptome145Y
F056624Metagenome137Y
F067546Metagenome125Y
F072103Metagenome / Metatranscriptome121Y
F073391Metagenome / Metatranscriptome120Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0182737_1020918All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria2417Open in IMG/M
Ga0182737_1021709All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria2338Open in IMG/M
Ga0182737_1022164All Organisms → cellular organisms → Bacteria2295Open in IMG/M
Ga0182737_1027797All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria1884Open in IMG/M
Ga0182737_1038788Not Available1423Open in IMG/M
Ga0182737_1040027All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1385Open in IMG/M
Ga0182737_1040557Not Available1371Open in IMG/M
Ga0182737_1045725Not Available1243Open in IMG/M
Ga0182737_1047901All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cenepequi1197Open in IMG/M
Ga0182737_1051367All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium1130Open in IMG/M
Ga0182737_1052182Not Available1116Open in IMG/M
Ga0182737_1053239Not Available1099Open in IMG/M
Ga0182737_1080755Not Available803Open in IMG/M
Ga0182737_1106300Not Available661Open in IMG/M
Ga0182737_1132558All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium569Open in IMG/M
Ga0182737_1135844All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium559Open in IMG/M
Ga0182737_1157076Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0182737_1020918Ga0182737_10209182F041209MQDRPCVPAQRARELTCCAVSSALCDEIASLRRKLQKNATARIVFLDETALRLSAAPTHTIVLPGEQAYVLASDTSSYAARYDMIAVCTGVETLLPKVFTPKERAGAQVRGVNSAMLHQFIDDTLAQAVEGLDRYPLTLVLDKATIHKNVDAIRQAFHDRGSQAIKDILLMPPNAAKRMSPLDNALFHDWKEACRKRCPVTKRTIEQVMADAWNKLPARLLHSHYKNCGLVRRTDPYFDCPDPAGHQHAR
Ga0182737_1021709Ga0182737_10217092F041209VLATDTSSYASRYDMIAVCTGVETLLPKVFTPAERKGADVRGVNSAMLQQFIDDTLAQAVEGLDRYPLVLVLDKATIHKNVDAIRQASHDRGSQAIRDILIMPPNAAKRMSPLDNALFHDWKEECRKRCPVTKQTIEQVMADAWNKLPARLLHAHYKNCGLVRGQDPYFDCPDPAGHQHG
Ga0182737_1022164Ga0182737_10221641F001230VGPQTTSEAVANAHVWFEHNSGWAPPDEGTMEEWLADGVCRAPDECLISPDGWCEHGLASWWLILEALDDPRP
Ga0182737_1027797Ga0182737_10277972F041209MSCGLTLAAVSADLCEQIANLRRKLQRIGPARTLFLDETALRLNAAPNHTLALPGQQPLVLATDTSAYAARYDMIAVCSGVETLLPMVFTPAERRGADVRGINGAMLQQFIDNTLAQAVEGLDRYPLTLVLDRAPIHLNTQQLLQSFHDRSSESIKEILLLPPNAAKRMSPLDNALFHDWKERCRKRCPVTNHTIEGVMSDAWNQLPAALIHQHYKHCGLVRGQDPYFDCPDPDGHAHGS
Ga0182737_1038788Ga0182737_10387881F034190NGDWCFINAVLGLMSPSATHPCPICIVSKNNLLSSSRYRTPADRHSIDHTHSPLLSIPPERIVPTLLHLFLGISNRIILDAFSELLGKERVETALKSITTVHSAGCGGAADLYDLNGQEISKWIKKECSATLLSAAAASSPIPAATSASHSILSRWLQQLHHCLLRSDVWTAADIDAWRSVVSDIHQHWRAETSIAAFPKLHMLHHSVDFAERHRFLGRASEAQIESFHASFNDLFHKQHRNQAGNTAERLRRCLADSSLRAVQSVLI
Ga0182737_1040027Ga0182737_10400273F050234VIPPWPLLVLMLEFPVIMALLDCWQRPGEHFGEGAEDRRAWLRWLLVAVVTIPVLLGYGIVLGYYFAVVRRNSP
Ga0182737_1040557Ga0182737_10405573F072103MTTILDTVENYEAQLLDLVKKTQAPVVGYVAKGVELVGDRLPSVSYPKALPTPIEVVESQVAFAKKLIDVNTAIVTSVLETVAPVAGYAKPKKVAKAKAA
Ga0182737_1045725Ga0182737_10457251F034190LGVPHSAAGKQHFAALLVYEGGDSWLELQDCCAEGLTPFTGDSAAFPHIWAVLQHFIDTRGAFLNGDWCFLNAVLGLMAPSTTHPCPICIVGKNNLLSSSRYRTANDRHSIDRTHTPLLTIIPERIVPTPLHLFLGISNRIILDAYKELFGEAVVLQAVAAIKTVHSSGCGGASDLYDLNGPEISKFLKQNRSAAMLESPAAAVILPAAARASHSILSRWLEQLHCSLLHSRDWTPADIGAWCSVVDDIQQHWCAETSQAAFPKLHMLRHSLEFAERHRFLGRASEAQIESFHAQFNVLFHKQHRNQSSNTAERLRRSLADTALRAVQPLLSLPIEPTSASF
Ga0182737_1047901Ga0182737_10479011F003648VWLPKERLMAMAASRCAVCSRAMVAALVEADPTDAALELRTFSCAECGHSRTYNVDAGDT
Ga0182737_1051367Ga0182737_10513671F034190HSAAFPHIWAVLLHFIDTLVAFLNGDWCFLNAVLGLMSPSATYPCPICIVSKNNLLSSSRHRTPADRHSIDRTHAPLLTIPPERIVPTPLHLFLGISNRIILDAFSELLGKERVETALRSITTVHSAGCSGAADLHDLNGQEISKWIKRECSAGVLAAAASSASLPAATNASHSILSRWLQQLHHCLLHSDDWTAADIDAWRSVVSDIHCNWRAETSIAAFPKLHMLHHSVDFAERHRFLGRASEAQIESFHASFNALFHKQHRNQSRNIAERLRRSLADSALRAVQPLLQT
Ga0182737_1052182Ga0182737_10521821F034190LGEAVVREAVQSIKSIHSAGCSGAADLHDLNGQEISKWIKKECSTSMLAAATASSPLPAATTASHSILSRWLQQLHHCLLRSGDWTAADIDAWRSVVSDIHSHWREETSIKLFPKLHMLHHAVDFAERHRFLGRASEAQIESYHASFNALFHKQHRNQSGNTAERLRRCLADSTLRAVQPFLQA
Ga0182737_1053239Ga0182737_10532392F034190ICIVSKNNLLHSSRHRTAADKHSRAAGQQPLLTIPPERIVPTPLHLFLGISNRIILDAFSELLGKERVETALKSITTVHSAGCGGAADLHDLNGPEISKWIKKECSATLLAVAAASSAVPAATCASHSILSRWLQQLHHCLLHSDDWKAADIDAWRLVASDIHQHWQAETSIAAFPKLHMLHHAVEFAERHRFLGRASEAQIESFHAQFNTLFHDHHLNQGDNTTERLRRCLADASLRAVQPFLHQ
Ga0182737_1080755Ga0182737_10807551F034190LMSPSATHPCPICIVSHKSLLSSSRYRTPADRHSLHPQQRPLLSIPPERIVPTPLHLFLGISNRIILEAFSELLGKDLVEAALKPVTTIHSAGCGGQSDLYDLNGPEISKWIKKERSANVLAAAASSSLPSATKATHSILSRWLQQLHSSLLHCRDWTGDDLESWRSVVDDIWQHWQAEAKTEPFPKLHMLRHSLEFAERHRFLGRASEAQIESFHAQFNTLFHKHHLNQGGNTAERLRRSLADASLRAVQTFLQP
Ga0182737_1106300Ga0182737_11063001F034190VSHKNYLHAARYRTPADKNSRAAGQQALLSIPPERIVPTPLHLFLGISNRIILDAFSELLGKELVEETLKSVTTVHSAGSGGKGDLYDLNGPEIRKWLKKKCAATLRESAEKKGALTAEQKSTFTTLQRWLEKLHEHLLHKDDWEAEDIEAWRAAVDDIWKNWQAETSQDAFPKLHMLRHSLEFAERHRFLGRTSEAQIESFHAYFNALFHQQHRNQSGM
Ga0182737_1132558Ga0182737_11325581F067546MTPVAARRAPLTVRTEGAAVVLELSDSLDPTTGRVLVDAVASAVATAPERVDIDLRAISTWTHDGAHALVECRELCRDLPEGLHYRTGRGPGRAALLAAYS
Ga0182737_1135844Ga0182737_11358441F073391TFTTETNKAEIPVGVCDVTWTNPSGQDTSIKVNIEGERTTYIRGSLIKFPNGAGEIYVLKAQDGTVIWQDQIEQGDWVWVLPGIYTCDLLELVGDPVLISFTVQTLPGSATQVEIFTAP
Ga0182737_1157076Ga0182737_11570761F056624MNPPQNHEKPRCNSCREDIRDRIATFDRRLLALEIIVRGEDGHNGMKSQLKTLCDRFDQFERKAIRWIAVGTSLPGIVVAVLAVLK
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