NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181372_1033615

Scaffold Ga0181372_1033615


Overview

Basic Information
Taxon OID3300017705 Open in IMG/M
Scaffold IDGa0181372_1033615 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029404Metagenome188N
F066135Metagenome127N
F105877Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0181372_10336153F029404GGAGGMLNFVELELGGDSWKITWDHSHRIKVKTTGKKSGLKYTMYSLTKLTPSQAYDIAMVQLEWLKKEIKNGNV
Ga0181372_10336154F066135GGAGMNGLRIHGVENIKVTSNDFDSFKTIVVTVTDEANRDFELTLFTNKGFTPNLEVEEGDA
Ga0181372_10336155F105877N/ALKENIFDLWVEYLELDGWPKGCNETYAEAARRTESEWLEMN

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