NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1001289

Scaffold Ga0181377_1001289


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1001289 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8159
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018831Metagenome / Metatranscriptome233Y
F018932Metagenome / Metatranscriptome232Y
F031501Metagenome / Metatranscriptome182N
F077316Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0181377_100128916F077316GAGMKKQSKVISKRLESWINNRLFKTLHKEEWEIETILYIYNNEKDGNIRGRSEQSKHSSRRNSEH
Ga0181377_100128918F018932N/ALTKDRATRHQVIWKRTKNGLELVMPKKITSDIGFQLMFGHREDHRVEEKRLDDNANKYNCKTYINVEDFKKYI
Ga0181377_100128920F018831N/AMKIVASVSIEINVEDTELLDDAKERAIDALIDNLEDWLNNNGIPPIIAIEYKLPEFGDNETDFLN
Ga0181377_100128924F031501N/AMTTELLDLFEEAKKIIDKQEELINRQQSIIKTMQQALQGVELNELLLKKQIADIQEELLTITNDYIDSKSIREGGV
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