NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181393_1025332

Scaffold Ga0181393_1025332


Overview

Basic Information
Taxon OID3300017748 Open in IMG/M
Scaffold IDGa0181393_1025332 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1709
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012671Metagenome / Metatranscriptome278N
F014732Metagenome / Metatranscriptome260Y
F087890Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181393_10253322F087890N/AMKKFLKDKSGPIMMGVGAILLVSDLMGVEGVITFAVGIILMVEGVDRM
Ga0181393_10253324F014732N/AMKTKEELEVNLAALKLLEAETGIKHENFKQQVQDTEKKLEDINKPELTPLQFDKIQEAVEEGVGNFSFDDNDNYEKEFGMEYDGKVYLESIDLTCTHELVENIVKEVYKLFTEAEELDTTEPDNHKPE
Ga0181393_10253325F012671N/AMKLIDKLKPEVIEALHEAKIQYSASHRSIFATLNSVSEYRDLTVDQLNLITAYLPQDLKPHSPIGWMYGDNILDKKHRL
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