NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181405_1007336

Scaffold Ga0181405_1007336


Overview

Basic Information
Taxon OID3300017750 Open in IMG/M
Scaffold IDGa0181405_1007336 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3214
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008748Metagenome / Metatranscriptome328Y
F043385Metagenome156Y
F083251Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181405_10073361F043385N/AMIIRKVSGLWIVEREHSGQIIFSHKSRMTCYEWMFKGINY
Ga0181405_10073362F008748N/AMSRPMKMTPFLVKLMKEKQMNREELKRLWFSIPRTKPVKEIKAVVVEKHGDNHYSCERKTQTDAYWSSSSANFNTFEQALERANSILSDDYYEGYELIIK
Ga0181405_10073363F083251N/AMKELNKTNKIKFYTYKKLLYILINLKLLTYNQKNSILSKYYDN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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