NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181405_1037981

Scaffold Ga0181405_1037981


Overview

Basic Information
Taxon OID3300017750 Open in IMG/M
Scaffold IDGa0181405_1037981 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1293
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013377Metagenome272N
F021206Metagenome220Y
F092867Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0181405_10379811F092867N/AHTHTSTVHKHKETVHGKECLAYRTNKDNIVVDLETFKAMSRPDKKEQDFGHCGDCRACWSKDVANISYPLH
Ga0181405_10379814F013377AGGAMTRKILKHWALFYKHNERQFISAPTRKELDSAIFAGAYAPSPNNVTYYVEYERDIKDTQYNQVHEV
Ga0181405_10379816F021206AGGAGMTVTLNQILAMENVLATRKIPSDIASMAKAKRYSESKQKVITLGEQPLHYVLRILAKEGI
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