NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181386_1011315

Scaffold Ga0181386_1011315


Overview

Basic Information
Taxon OID3300017773 Open in IMG/M
Scaffold IDGa0181386_1011315 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3027
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016661Metagenome245Y
F079927Metagenome115N
F097118Metagenome104N
F105152Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0181386_10113153F105152GGAGMAREYCRIDDCPSYDFSDYEDNTGYYSPHDNREADYDPIDKVEMRERLMEVKQRRGITDD
Ga0181386_10113154F079927AGGAGMSKDYREQSQLEDEADEKYLTMYQYYKELTDLERGEYDALHSYPFDESEEANKEYTEGYRTGYEYAQRMGAKDNG
Ga0181386_10113156F016661GAGGMNYNAERYLALKRYELEVKRDKWRTILWNVSVTGIFAMVLIQVSRVI
Ga0181386_10113159F097118AGGMITFPSGLKFGKGEDSLVDSLFTGSTTNDGWYTVTGRKYKTMRFFTGNGKPLFYIVSNKQGITSGNLTVSGEKFYYMAGTSSLTIKKLGLDKLDYTTEKTLITDIIEVA
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