NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181358_1086398

Scaffold Ga0181358_1086398


Overview

Basic Information
Taxon OID3300017774 Open in IMG/M
Scaffold IDGa0181358_1086398 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1140
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C203(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072277Metagenome121Y
F102814Metagenome101N
F103142Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181358_10863981F102814AGGAMAGTKPRDSQKQRLYDAQRLAGFYDTGEVMTIKEAQKFVNQVLSHQKTKKLHKQYAFWASVYPSKIIVEAGSGNHATMKHRDWELVRLIRLTKSGRNKFIILHEIAHHIVWGRESHGAEFADVLLQFTTRYLGKPDADKLANAFNEKRV
Ga0181358_10863982F072277AGGAGMEVCAKCGVSIGQFEVFPEGVCVKCFAVEFEKEFQSALKIGRFKK
Ga0181358_10863983F103142GGAGGMSLDYKGFEWGERISSDYESVDRFLHEKIVVPEAPSIGDLNGAAEWLAAYASETAEDAQGWANVVAFLILTAESKQKRSAIAEAKRAFAKEKGIPVSQVRIKREAEVIRQGLALIPDKID
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