NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181380_1014282

Scaffold Ga0181380_1014282


Overview

Basic Information
Taxon OID3300017782 Open in IMG/M
Scaffold IDGa0181380_1014282 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3015
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014373Metagenome / Metatranscriptome263N
F016661Metagenome245Y
F065668Metagenome127N
F079927Metagenome115N
F095309Metagenome105N
F105152Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0181380_101428210F016661GAGGMNYSAERYLALKQFEREQQRDKIRAVLFNLMIGGYATLITIQVMRAL
Ga0181380_10142822F014373AGGAGMSRCKACDVILTEAELRKRDRVTDEHLDLCSVCHSASDEAIEENWSIAEDSGIIRSNN
Ga0181380_10142824F105152GGAGMNREYCRVDDDPSYDYSDYEDKTGYYTPYDSREVDYDPIEQPEMYKRIKEVKTRLGVKQD
Ga0181380_10142825F079927GAGGMSKDYREQAQLEDEADEKYLTMYQYYKELTDFERGEYDALHSYPFDESEDANKEYTEGYRTGYEYVQRMGANDNE
Ga0181380_10142828F065668GGAMLYTIWVGGVEVTAHLTNREEAYRIASNWRNDGYTDVVVERYKPYEYHS
Ga0181380_10142829F095309GAGGMSYLEYRKKLRMLTAKYIEAYKKYGWNADTTRKLRQQKIDLRAKYSLHSFDYAVESLTSKGIL
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