 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017788 Open in IMG/M |
| Scaffold ID | Ga0169931_10014457 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10677 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (77.78%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province | |||||||
| Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000473 | Metagenome / Metatranscriptome | 1097 | Y |
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F001176 | Metagenome / Metatranscriptome | 756 | Y |
| F001280 | Metagenome / Metatranscriptome | 732 | Y |
| F002060 | Metagenome / Metatranscriptome | 597 | Y |
| F003582 | Metagenome / Metatranscriptome | 478 | Y |
| F011938 | Metagenome / Metatranscriptome | 285 | Y |
| F013878 | Metagenome / Metatranscriptome | 267 | Y |
| F017101 | Metagenome / Metatranscriptome | 242 | Y |
| F028150 | Metagenome / Metatranscriptome | 192 | Y |
| F076961 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0169931_1001445710 | F000473 | GAGG | MFIDKSAEKQREHFKYGINQWTGEPNKPVFYTEEMRKGVHAIKKPPMLLMHIIKYPDFLALRLYEDNFLQFTGTKKEMVIDYVNKVKSLIESYGVRCELEGVPSERVL |
| Ga0169931_1001445711 | F011938 | AGGGGG | VKEYYDVVHIVYIHSEQCYGSVESLGAYASMVKWNKNGEEIEELMENEDFSIMEEIIFKHIEESE |
| Ga0169931_1001445712 | F000671 | GAGG | MEKILCYSCNKTKNKLDVKRSSLLPINLLMCETCITSKFEPRWVIILAGRSHGSEHVKEFILKKRYSGAEVSASELLI |
| Ga0169931_1001445713 | F002060 | GAGG | MSINYTSLVLALLAAIMSGMGTAIIAGIRDNKKEKIRRAEREQDHLKMEIKDLKIALYKIERELTEWKDKYYSAIQELIGVKAELEETLLKLSFIDKSIEEYQIDEGLD |
| Ga0169931_1001445718 | F017101 | N/A | VSNNQVTVLQAIVDDVATALFQKWGNALPEDQRTDDALAALSTNAKETTYFVVQMFMDKFNQEAESLKSQD |
| Ga0169931_100144572 | F028150 | N/A | MAALNENFTFLGFFVAWVVLEGSAKTVVGYVTLASVALWFMTIGIREKAENKED |
| Ga0169931_1001445723 | F076961 | N/A | VEDYIENKVRQEIIKELSNLELPHEWKPKEVIDFIIRKIKKE |
| Ga0169931_1001445725 | F001280 | AGGAG | MCYECGCESVGSETGIAKIPGGILDISRDGEAGLTLNMTATPEQRERFINE |
| Ga0169931_1001445726 | F001176 | GGA | MDTPPNNEPSGAVTSQEAARKNPSQGKYRSGVQNQRAMTRIDVNRHGIRREVSLAPRAPKRSGRPKKV |
| Ga0169931_100144576 | F003582 | GGA | MNTYKIKIEIDAEIEAFDEADAIDYANDIFGVDDEVKNVKVVSVKEK |
| Ga0169931_100144578 | F013878 | AGG | MLNLTELGVEVFIKKAKNVTPFWDNYDLIIWKKDYKGFTNIKGMFKNNNWGMAEKFAVNNNGIWKLPAKYVKHFK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |