NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10091014

Scaffold Ga0169931_10091014


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10091014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2979
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F003582Metagenome / Metatranscriptome478Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_100910142F002060AGGMNLDPTAIAIAIFAAMLSGMGTAIVTGLNDNRKEKIRQKEREQDHLKLEVKDLKIELYKIERELTEWKDKYYNAIQELIAVKAELEETIIQLSYIDAKISKYDENESLLDS
Ga0169931_100910143F000671AGGAMEKILCYSCNKTKHKLDVKKSSLLPINLFICEGCQASKFEPRWVIILAGRSSGPDYVKEFIVRRRYVGNEISASELLV
Ga0169931_100910144F011938AGGGGGVKEYYDTILVVYIHEEQCHGTVENMGAFASLVKYNKYGIEHEDLFENEEFTVLNEIVFKHIEEQE
Ga0169931_100910145F000473GAGGMSISPYFDNNHFKNGINLWTGEPNKPVFYTEEMKRKVWEIKKPSLLLMDVVKYPDFLALRLYEDNFLQFEGTKKEIVIDYVSKVKKLIESYGVRCELEGVPSEGVL
Ga0169931_100910147F013878AGGAMLNLTERGVEVFIRKAKNIQPFWQNYDLIIWRKDNSGFTNISGMFKNNSWGIVEIVSVDSNGIWKLPKKYVKHFK
Ga0169931_100910149F003582N/AMNTYRVKLEVEAEVQAFNEEDATDYVNDIFGIDDEVKSIKIIGIKEK
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