NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187807_1010923

Scaffold Ga0187807_1010923


Overview

Basic Information
Taxon OID3300017926 Open in IMG/M
Scaffold IDGa0187807_1010923 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2788
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001142Metagenome / Metatranscriptome766Y
F028872Metagenome / Metatranscriptome190Y
F090655Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0187807_10109233F090655GAGGVADFEVMTPLGDLRWHWGSAYIINCLGLGKWVAERRDTHETLRDETPLGLREQIIADYGRRRVPRTSSG
Ga0187807_10109234F028872AGGMADREHDVSGMTDGELHRARRDLEVSLALAFPGSPVRVPILEHLSAIEAELATRGGGG
Ga0187807_10109235F001142GGAGMDRVASPHRGPFQVDEEAALAELELAWSCGGYHGFSAEDGTWCAITSSGQVLTAATPDELDRAIRAHWQAMQ
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