NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187803_10007117

Scaffold Ga0187803_10007117


Overview

Basic Information
Taxon OID3300017934 Open in IMG/M
Scaffold IDGa0187803_10007117 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4435
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000208Metagenome / Metatranscriptome1593Y
F007596Metagenome348Y
F024602Metagenome / Metatranscriptome205Y
F094820Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0187803_100071171F024602N/AKRMYRGLLKTLARVWNPNEIQDPAIQQKVLAYMQAAERGLRRAEAAVNKTGLAAFAEILRPLKLRSLDQVDNLKTLQEIVVALEAATRGK
Ga0187803_100071173F094820AGGAGGMVKDNPPSPAESACLPVNPLPIALYVSDGLIFELHDGGQPCRSFSIRWERLVPTRKDQPETVPPNPQAASRTCRD
Ga0187803_100071174F000208GAGGMRIRVTTRAHLYERRKQQHIERGYQIEDERPIPVNGFCSFVAVRELPASDGLTELVAQALNGSQGTHDDY
Ga0187803_100071175F007596GAGGMSLRIRFRFDGKCSLHPRYDPARVGRPQHGNCEGCESLYVIHLHTKIEKRRAESENGILVRTSSGREEPHAIDEFRQLSNTENK
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