NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187775_10000909

Scaffold Ga0187775_10000909


Overview

Basic Information
Taxon OID3300017939 Open in IMG/M
Scaffold IDGa0187775_10000909 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7074
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.2396Long. (o)-73.2024Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022968Metagenome / Metatranscriptome212Y
F057488Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0187775_100009096F057488GGAGGMRALLLGALLVVGLLSRATAQLAAGPIPIESSVNGIPVTVSATYRITANPVGDDVAVDARIFADLIDLQKKLPDIMDSFKRGSGRCNRSADSQNPVVSFKGGSLWPRSDQLLMFVRGDIDIWTCVVGRPRSVIRWEKKKIAFIPLKLPVRHTWRTVKKNMDGTQAFHGVLQVSLAEKDEATVALRIAEPSIKLDGQPTFATNANLGLAMADMSHKVSKTLQSAIDLAKLKDALPKEIQKLNMTVVSARFRDLGGHAIAEVNLAGRVSGNTKASLLQQIAASYRPN
Ga0187775_100009097F022968AGGMLSFVISEGRLFALKPSDWSMLLGGVALCGLLALLF
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