NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187879_10022773

Scaffold Ga0187879_10022773


Overview

Basic Information
Taxon OID3300017946 Open in IMG/M
Scaffold IDGa0187879_10022773 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3855
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072368Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0187879_100227732F072368GGAGVNLYWIVGLTIIGLAVLVDPAFAGISATPGPIAGIGLPALAVIGGAYWVGRKLLARKK
Ga0187879_100227733F072368GGAGMSVCRICGLSIIGLVALMEPAFAFEAVPGPIAGIGLPTLAIIGGAYWIGRKVSARKNEK
Ga0187879_100227734F072368GGAGVNVYRICGLTIIGLMALMEFAFAVEPVPGPIAGVGLPALAVIGGAYWVGRKLLARKK
Ga0187879_100227735F072368AGGGGGMNLYRIFGWATIGLTVFVDPALAGPTSAAPGPIAGIGLPALAVIGGAYWLGRKLLARKK
Ga0187879_100227736F072368GGAGGMGVYRICGLTIIGLTALTEPAVAGTVAVPGPIAGIGLPALAVIGGAYWIGRRVSRRNNKK
Ga0187879_100227737F072368GGAGMNVYRICGLTMIGLIALMEPAFAQVAVPGPIAGIGLPALAVIGGAYWVGRKLFSRK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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