NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181590_10370257

Scaffold Ga0181590_10370257


Overview

Basic Information
Taxon OID3300017967 Open in IMG/M
Scaffold IDGa0181590_10370257 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1024
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012970Metagenome275N
F074816Metagenome119N
F097231Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181590_103702571F074816GGAGGVSTKQRDIVLSIIRHGLTLGAGALIASGKLDEAGGNELVAALMAIIGIAWGINDKVKRVD
Ga0181590_103702572F012970AGGMSEQTYNQQAAERVAKRIPDGFGIDPMTVLVLLQTVIPAFLDCLNRNDDTDPDTVFERVKTLYDKNPERLLRRTTRNCRSQARREGTRLSYAQAEDMARAIILEAIGTEPTFGSALAREVEDVD
Ga0181590_103702573F097231GGAGGMLTLLLALNLLLDEGNSPFPMTAVPQADPQPAPVADDPHPIGTVQREEFYVLQSEVPLFVVASPPGLVEITHEQGPLMARGRFAGGNGKTETRMLLGNHLYFIDAVKSGTVELIVIPVGATEAEQIQRQLVEVQAGPRP
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